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  • The Barbara K. Ostrom (1978) Bioinformatics and Computing Facility
  • Computing Resources
  • Bioinformatics Topics
    • Tools - A Basic Bioinformatics Toolkit
    • Tasks - Bioinformatics Methods
      • UCSC Genome Bioinformatics
        • Interacting with the UCSC Genome Browser
        • Obtaining DNA sequence from the UCSC Database
        • Obtaining genomic data from the UCSC database using table browser queries
        • Filtering table browser queries
        • Performing a BLAT search
        • Creating Custom Tracks
        • UCSC Intersection Queries
        • Viewing cross-species alignments
        • Galaxy
        • Editing and annotation gene structures with Argo
      • GeneGO MetaCore
      • Functional Annotation of Gene Lists
      • Multiple Sequence Alignment
      • Phylogenetic analysis
      • Microarray data processing with R/Bioconductor
    • Running Jupyter notebooks on luria cluster nodes
  • Data Management
  • Mini Courses
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  1. Bioinformatics Topicschevron-right
  2. Tasks - Bioinformatics Methods

UCSC Genome Bioinformatics

Interacting with the UCSC Genome Browserchevron-rightObtaining DNA sequence from the UCSC Databasechevron-rightObtaining genomic data from the UCSC database using table browser querieschevron-rightFiltering table browser querieschevron-rightPerforming a BLAT searchchevron-rightCreating Custom Trackschevron-rightUCSC Intersection Querieschevron-rightViewing cross-species alignmentschevron-rightGalaxychevron-rightEditing and annotation gene structures with Argochevron-right
PreviousTasks - Bioinformatics Methodschevron-leftNextInteracting with the UCSC Genome Browserchevron-right

Last updated 2 years ago

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Massachusetts Institute of Technology

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