> For the complete documentation index, see [llms.txt](https://igb.mit.edu/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://igb.mit.edu/bioinformatics-topics/tools-a-basic-bioinformatics-toolkit/bioinformatics-applications-of-unix.md).

# Bioinformatics Applications of Unix

- [Unix commands applied to bioinformatics](https://igb.mit.edu/bioinformatics-topics/tools-a-basic-bioinformatics-toolkit/bioinformatics-applications-of-unix/unix-commands-applied-to-bioinformatics.md)
- [Manipulate NGS files using UNIX commands](https://igb.mit.edu/bioinformatics-topics/tools-a-basic-bioinformatics-toolkit/bioinformatics-applications-of-unix/manipulate-ngs-files-using-unix-commands.md)
- [Manipulate alignment files using UNIX commands](https://igb.mit.edu/bioinformatics-topics/tools-a-basic-bioinformatics-toolkit/bioinformatics-applications-of-unix/manipulate-alignment-files-using-unix-commands.md)