> For the complete documentation index, see [llms.txt](https://igb.mit.edu/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources.md).

# Advanced Utilization of IGB Computational Resources

- [High Performance Computing Clusters](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/high-performance-computing-clusters.md)
- [Slurm](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/slurm.md)
- [Checking the Status of Computing Nodes](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/slurm/checking-the-status-of-computing-nodes.md)
- [Submitting Jobs / Slurm Scripts](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/slurm/submitting-jobs-slurm-scripts.md)
- [Interactive Sessions](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/slurm/interactive-sessions.md)
- [Package Management](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/package-management.md)
- [The System Package Manager](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/package-management/the-system-package-manager.md)
- [Environment Modules](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/package-management/environment-modules.md)
- [Conda Environments](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/package-management/conda-environments.md)
- [SSH Port Forwarding](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/ssh-port-forwarding.md)
- [SSH Port Forwarding Jupyter Notebooks](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/ssh-port-forwarding/ssh-port-forwarding-jupyter-notebooks.md)
- [Containerization](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/containerization.md)
- [Docker](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/containerization/docker.md)
- [Docker Installation](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/containerization/docker/docker-installation.md)
- [Running Docker Images](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/containerization/docker/running-docker-images.md)
- [Building Docker Images](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/containerization/docker/building-docker-images.md)
- [Singularity](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/containerization/singularity.md)
- [Differences from Docker](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/containerization/singularity/differences-from-docker.md)
- [Running Images in Singularity](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/containerization/singularity/running-images-in-singularity.md)
- [Running Nextflow / nf-core Pipelines](https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources/running-nextflow-nf-core-pipelines.md)


---

# Agent Instructions
This documentation is published with GitBook. GitBook is the documentation platform designed so that both humans and AI agents can read, navigate, and reason over technical content effectively. Learn more at gitbook.com.

## Querying This Documentation
If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter:

```
GET https://igb.mit.edu/mini-courses/advanced-utilization-of-igb-computational-resources.md?ask=<question>
```

The question should be specific, self-contained, and written in natural language.
The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.