# Loading Data Into GeneGO

* A link to example data is below. xls files are required, open both and examine the data.
* Key structure is:

```
Identifier   FoldChange    pvalue
```

* NOTE: Raw gene list of genes of interest works fine as well.
* From the [Start Page](https://portal.genego.com/cgi/data_manager.cgi#), there are 3 ways to access data loading tool:

1. File-->Upload Data...
2. Upload Data icon
3. Upload Page-->Upload Experiments with Gene or Protein IDs

* NOTES: Tools emphasize the Activate/Deactivate/Reload requirements.
* Choose the file [ColonMet\_Faked.xls](http://rowley.mit.edu/dropbox/GeneGoTraining/ColonMet_Faked.xls) and click Next
* Adjust data types as needed. Rename columns and experiments as necessary. Make sure that fold changes and supporting p-value columns are adjacent to each other. Click Next
* Specify the species and click Next.
* The Background processing status page will indicate when upload is complete. Once processed, the line can be deleted from the table.
* Return to the Background processing page from the start page by File-->Background processing item.


---

# Agent Instructions: Querying This Documentation

If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter:

```
GET https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/genego-metacore/loading-data-into-genego.md?ask=<question>
```

The question should be specific, self-contained, and written in natural language.
The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
