# Tasks - Bioinformatics Methods

- [UCSC Genome Bioinformatics](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics.md)
- [Interacting with the UCSC Genome Browser](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/interacting-with-the-ucsc-genome-browser.md)
- [Obtaining DNA sequence from the UCSC Database](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/obtaining-dna-sequence-from-the-ucsc-database.md)
- [Obtaining genomic data from the UCSC database using table browser queries](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/obtaining-genomic-data-from-the-ucsc-database-using-table-browser-queries.md)
- [Filtering table browser queries](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/filtering-table-browser-queries.md)
- [Performing a BLAT search](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/performing-a-blat-search.md)
- [Creating Custom Tracks](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/creating-custom-tracks.md)
- [UCSC Intersection Queries](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/ucsc-intersection-queries.md)
- [Viewing cross-species alignments](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/viewing-cross-species-alignments.md)
- [Galaxy](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/galaxy.md)
- [Intro to Galaxy](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/galaxy/intro-to-galaxy.md)
- [Galaxy NGS Illumina QC](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/galaxy/galaxy-ngs-illumina-qc.md)
- [Galaxy NGS Illumina SE Mapping](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/galaxy/galaxy-ngs-illumina-se-mapping.md)
- [Galaxy SNP Interval Data](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/galaxy/galaxy-snp-interval-data.md)
- [Editing and annotation gene structures with Argo](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/ucsc-genome-bioinformatics/editing-and-annotation-gene-structures-with-argo.md)
- [GeneGO MetaCore](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/genego-metacore.md)
- [GeneGo Introduction](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/genego-metacore/genego-introduction.md)
- [Loading Data Into GeneGO](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/genego-metacore/loading-data-into-genego.md)
- [Data Management in GeneGO](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/genego-metacore/data-management-in-genego.md)
- [Setting Thresholds and Background Sets](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/genego-metacore/setting-thresholds-and-background-sets.md)
- [Search And Browse Content Tab](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/genego-metacore/search-and-browse-content-tab.md)
- [Workflows and Reports Tab](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/genego-metacore/workflows-and-reports-tab.md)
- [One-click Analysis Tab](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/genego-metacore/one-click-analysis-tab.md)
- [Building Network for Your Experimental Data](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/genego-metacore/building-network-for-your-experimental-data.md)
- [Functional Annotation of Gene Lists](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/functional-annotation-of-gene-lists.md)
- [Multiple Sequence Alignment](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/multiple-sequence-alignment.md)
- [Clustalw2](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/multiple-sequence-alignment/clustalw2.md)
- [Phylogenetic analysis](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/phylogenetic-analysis.md)
- [Neighbor Joining method in Phylip](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/phylogenetic-analysis/neighbor-joining-method-in-phylip.md)
- [Microarray data processing with R/Bioconductor](https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods/microarray-data-processing-with-r-bioconductor.md)


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# Agent Instructions: Querying This Documentation

If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter:

```
GET https://igb.mit.edu/bioinformatics-topics/tasks-bioinformatics-methods.md?ask=<question>
```

The question should be specific, self-contained, and written in natural language.
The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.