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  • The Barbara K. Ostrom (1978) Bioinformatics and Computing Facility
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  • Bioinformatics Topics
    • Tools - A Basic Bioinformatics Toolkit
      • Getting more out of Microsoft Excel
      • Bioinformatics Applications of Unix
        • Unix commands applied to bioinformatics
        • Manipulate NGS files using UNIX commands
        • Manipulate alignment files using UNIX commands
      • Alignments and Mappers
      • Relational databases
        • Running Joins on Galaxy
      • Spotfire
    • Tasks - Bioinformatics Methods
      • UCSC Genome Bioinformatics
        • Interacting with the UCSC Genome Browser
        • Obtaining DNA sequence from the UCSC Database
        • Obtaining genomic data from the UCSC database using table browser queries
        • Filtering table browser queries
        • Performing a BLAT search
        • Creating Custom Tracks
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          • Intro to Galaxy
          • Galaxy NGS Illumina QC
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        • Editing and annotation gene structures with Argo
      • GeneGO MetaCore
        • GeneGo Introduction
        • Loading Data Into GeneGO
        • Data Management in GeneGO
        • Setting Thresholds and Background Sets
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        • Building Network for Your Experimental Data
      • Functional Annotation of Gene Lists
      • Multiple Sequence Alignment
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        • Neighbor Joining method in Phylip
      • Microarray data processing with R/Bioconductor
    • Running Jupyter notebooks on luria cluster nodes
  • Data Management
    • Globus
  • Mini Courses
    • Schedule
      • Previous Teaching
    • Introduction to Unix and KI Computational Resources
      • Basic Unix
        • Why Unix?
        • The Unix Tree
        • The Unix Terminal and Shell
        • Anatomy of a Unix Command
        • Basic Unix Commands
        • Output Redirection and Piping
        • Manual Pages
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        • Unix Text Editors
          • nano
          • vi / vim
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      • Software Installation
        • Module
        • Conda Environment
      • Slurm
    • Introduction to Unix
      • Why Unix?
      • The Unix Filesystem
        • The Unix Tree
        • Network Filesystems
      • The Unix Shell
        • About the Unix Shell
        • Unix Shell Manual Pages
        • Using the Unix Shell
          • Viewing the Unix Tree
          • Traversing the Unix Tree
          • Editing the Unix Tree
          • Searching the Unix Tree
      • Files
        • Viewing File Contents
        • Creating and Editing Files
        • Manipulating Files
        • Symbolic Links
        • File Ownership
          • How Unix File Ownership Works
          • Change File Ownership and Permissions
        • File Transfer (in-progress)
        • File Storage and Compression
      • Getting System Information
      • Writing Scripts
      • Schedule Scripts Using Crontab
    • Advanced Utilization of IGB Computational Resources
      • High Performance Computing Clusters
      • Slurm
        • Checking the Status of Computing Nodes
        • Submitting Jobs / Slurm Scripts
        • Interactive Sessions
      • Package Management
        • The System Package Manager
        • Environment Modules
        • Conda Environments
      • SSH Port Forwarding
        • SSH Port Forwarding Jupyter Notebooks
      • Containerization
        • Docker
          • Docker Installation
          • Running Docker Images
          • Building Docker Images
        • Singularity
          • Differences from Docker
          • Running Images in Singularity
      • Running Nextflow / nf-core Pipelines
    • Python
      • Introduction to Python for Biologists
        • Interactive Python
        • Types
          • Strings
          • Lists
          • Tuples
          • Dictionaries
        • Control Flow
        • Loops
          • For Loops
          • While Loops
        • Control Flows and Loops
        • Storing Programs for Re-use
        • Reading and Writing Files
        • Functions
      • Biopython
        • About Biopython
        • Quick Start
          • Basic Sequence Analyses
          • SeqRecord
          • Sequence IO
          • Exploration of Entrez Databases
        • Example Projects
          • Coronavirus Exploration
          • Translating a eukaryotic FASTA file of CDS entries
        • Further Resources
      • Machine Learning with Python
        • About Machine Learning
        • Hands-On
          • Project Introduction
          • Supervised Approaches
            • The Logistic Regression Model
            • K-Nearest Neighbors
          • Unsupervised Approaches
            • K-Means Clustering
          • Further Resources
      • Data Processing with Python
        • Pandas
          • About Pandas
          • Making DataFrames
          • Inspecting DataFrames
          • Slicing DataFrames
          • Selecting from DataFrames
          • Editing DataFrames
        • Matplotlib
          • About Matplotlib
          • Basic Plotting
          • Advanced Plotting
        • Seaborn
          • About Seaborn
          • Basic Plotting
          • Visualizing Statistics
          • Visualizing Proteomics Data
          • Visualizing RNAseq Data
    • R
      • Intro to R
        • Before We Start
        • Getting to Know R
        • Variables in R
        • Functions in R
        • Data Manipulation
        • Simple Statistics in R
        • Basic Plotting in R
        • Advanced Plotting in R
        • Writing Figures to a File
        • Further Resources
    • Version Control with Git
      • About Version Control
      • Setting up Git
      • Creating a Repository
      • Tracking Changes
        • Exercises
      • Exploring History
        • Exercises
      • Ignoring Things
      • Remotes in Github
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  1. Mini Courses
  2. Schedule

Previous Teaching

DATE
TIME
Instructor
Location
Room
Topic

Mon May 11, 2015

2pm-3pm

Duanduan Ma

Building 76

76-156a&b

Introduction to UNIX and the KI/BioMicro computational resources

Mon Jun 15, 2015

1:30pm-3pm

Duanduan Ma

Building 68

68-374

Follow Up Course of Introduction to UNIX and the KI/BioMicro computational resources

Mon Jul 13, 2015

10am-11am

Charlie Whittaker

Building 76

76-156a&b

Introduction to Spotfire

Mon Aug 10, 2015

1:30pm-3pm

Duanduan Ma

Building 56

56-602

Introduction to UNIX and the KI/BioMicro computational resources

Mon Sep 14, 2015

1pm-4pm

Duanduan Ma

Building 68

68-374

Introduction to Python

Mon Oct 19, 2015

1pm-4pm

Duanduan Ma

Building 68

68-674

Introduction to Python

Mon Nov 9, 2015

1:30pm-3:30pm

Jie Wu and Vincent Butty

Building 68

68-181

A Traveller's companion to RNA-Seq interpretation

Mon Dec 14, 2015

2pm-4pm

Duanduan Ma

Building 68

68-474

Introduction to UNIX and the KI/BioMicro computational resources

Thur Jan 7, 2016

1:30pm-4:30pm

Duanduan Ma

Building 32

32-124

Quantitative Biology Workshop Outreach-Introduction to Python

Fri Jan 29, 2016

9:00am-11:00am

Charlie Whittaker and Duanduan Ma

Building 14N (DIRC)

14N-132

Visualizing and Accessing Genomic Data Using Publically Available Genome Browsers and Databases

Tue Feb 16, 2016

2:00am-3:00am

Sara Strandberg-Qlucore

Building 76

76-156B

Introduction to Qlucore software

Mon Mar 7, 2016

2pm-4pm

Duanduan Ma

Building 56

56-602

Introduction to UNIX and the KI/BioMicro computational resources

Mon April 11, 2016

1pm-4pm

Duanduan Ma

Building 68

68-121

Introduction to R

Mon May 2, 2016

1pm-4pm

Duanduan Ma

Building 68

68-374

Introduction to R

Mon May 9, 2016

1pm-3pm

Qlucore

Building 14N(DIRC)

14N-132

Hands on training of Qlucore software

Mon June 6, 2016

2pm-4pm

Duanduan Ma

Building 68

68-374

Introduction to UNIX and the KI/BioMicro computational resources

Mon Jun 13, 2016

1pm-4pm

Duanduan Ma

Building 76

76-156A/B

Introduction to R

Mon July 11, 2016

1pm-4pm

Duanduan Ma

Building 56

56-602

Introduction to R

Mon Aug 8, 2016

1pm-4pm

Duanduan Ma

Building 68

68-374

Introduction to R

Mon Sep 12, 2016

2pm-4pm

Duanduan Ma

Building 76

76-459

Introduction to UNIX and the KI/BioMicro computational resources

Tue Oct 18, 2016

1pm-3pm

Duanduan Ma

Building 68

68-274

Introduction to UNIX and the KI/BioMicro computational resources

Mon Nov 7, 2016

1:00pm-2:00pm

Jie Wu & Vincent Butty

Building 68

68-181

Mon Nov 14, 2016

1:00pm-2:00pm

Jie Wu & Vincent Butty

Building 68

68-181

Mon Dec 12, 2016

2pm-4pm

Duanduan Ma

Building 76

76-259

Introduction to UNIX and the KI/BioMicro computational resources

Thurs Jan 19, 2017

1pm-3pm

Duanduan Ma

Building 68

68-274

Introduction to UNIX and the KI/BioMicro computational resources

Fri Feb 3, 2017

12:00pm-2:00pm

Charlie Whittaker and Duanduan Ma

Building 14N (DIRC)

14N-132

Visualizing and Accessing Genomic Data Using Publically Available Genome Browsers and Databases

Mon Mar 13, 2017

2pm-4pm

Duanduan Ma

Building 68

68-374

Introduction to UNIX and the KI/BioMicro computational resources

Mon April 24, 2017

1pm-4pm

Duanduan Ma

Building 68

68-574

Introduction to Python

Mon May 1, 2017

1pm-4pm

Duanduan Ma

Building 68

68-374

Introduction to Python

Mon June 5, 2017

1pm-4pm

Duanduan Ma

Building 68

68-121

Introduction to Python

Mon July 10, 2017

1pm-4pm

Duanduan Ma

Building 76

76-559

Introduction to Python

Mon Aug 28, 2017

2pm-4pm

Duanduan Ma

Building 68

68-374

Introduction to UNIX and the KI/BioMicro computational resources

Mon Sep 25, 2017

2:00pm-3:00pm

Vincent Butty

Building 68

68-181

Mon Oct 2, 2017

1:00pm-2:00pm

Vincent Butty

Building 68

68-181

Mon Nov 13, 2017

2pm-4pm

Duanduan Ma

Building 76

76-259

Introduction to UNIX and the KI/BioMicro computational resources

Mon Dec 11, 2017

1pm-4pm

Duanduan Ma

Building 56

56-602

Introduction to R

Wed Jan 31, 2018

10am-12pm

Charlie Whittaker

Building 14N (DIRC)

14N-132

Gene Set Enrichment Analysis

Mon Feb 12, 2018

1pm-4pm

Duanduan Ma

Building 76

76-459

Introduction to R

Mon Mar 12, 2018

2pm-4pm

Duanduan Ma

Building 56

56-602

Introduction to UNIX and the KI/BioMicro computational resources

Mon Apr 23, 2018

1:30pm-2:30pm

Duanduan Ma

Building 68

68-181

Introduction to Biopython

Mon May 14, 2018

2:30pm-3:30pm

Duanduan Ma

Building 76

76-259

Introduction to Biopython

Mon June 11, 2018

2:00pm-4:00pm

Duanduan Ma

Building 56

56-602

Introduction to UNIX and the KI/BioMicro computational resourceso Biopython

Mon July 16, 2018

2:30pm-4:00pm

Duanduan Ma

Building 68

68-121

Introduction of Python to biologists session 1

Mon August 13, 2018

2:30pm-4:00pm

Duanduan Ma

Building 76

76-559

Introduction of Python to biologists session 2

Mon September 10, 2018

2:00pm-4:00pm

Duanduan Ma

Building 56

56-602

Introduction to UNIX and the KI/BioMicro computational resources

Tue October 23, 2018

1:30pm-2:30pm

Vincent Butty

Building 68

68-181

Mon November 5, 2018

1pm-2pm

Vincent Butty

Building 68

68-181

Mon December 10, 2018

2:00pm-4:00pm

Duanduan Ma

Building 76

76-259

Introduction to UNIX and the KI/BioMicro computational resources

Thursday Jan 31, 2019

10am-12pm

Charlie Whittaker

Building 14N (DIRC)

14N-132

Gene Set Enrichment Analysis

Mon February 11, 2019

2:30pm-4:00pm

Duanduan Ma

Building 68

68-674

Introduction of Python to biologists session 1

Mon March 11, 2019

2:30pm-4:30pm

Duanduan Ma

Building 76

76-259

Introduction of Python to biologists session 2

Mon April 8, 2019

2:00pm-4:00pm

Duanduan Ma

Building 68

68-180

Introduction to UNIX and the KI/BioMicro computational resources

Mon May 13, 2019

2pm-4pm

Duanduan Ma

Building 68

68-121

Introduction to R session 1

Mon June 10, 2019

2pm-4pm

Duanduan Ma

Building 76

76-659

Introduction to R session 2

Mon July 8, 2019

2:00pm-4:00pm

Duanduan Ma

Building 68

68-574

Introduction to UNIX and the KI/BioMicro computational resources

Tue August 27, 2019

2:30pm-3:30pm

Jingzhi Zhu & Duanduan Ma

Building 76

76-659

How to install software packages yourself on computing clusters

Wed September 25, 2019

1:00pm-2:00pm

Vincent Butty

Building 68

68-181

Wed October 2, 2019

1:00pm-2:00pm

Vincent Butty

Building 68

68-181

Mon November 18, 2019

2:00pm-4:00pm

Duanduan Ma

Building 76

76-659

Introduction to UNIX and the KI/BioMicro computational resources

Tues December 10, 2019

1:00pm-2:00pm

BMC/IGB core (Vincent Butty)

Building 68

68-181

Mon January 31, 2020

2:00pm-3:30pm

Duanduan Ma

Building 76

76-659

Introduction of machine learning and its applications in biology

Mon February 10, 2020

2:00pm-4:30pm

Duanduan Ma

Building 76

76-659

Introduction to UNIX and the KI/BioMicro computational resources

Mon March 9, 2020

2:30pm-4:00pm

Duanduan Ma

Building 76

76-659

Introduction of Python to biologists session 1

Mon April 17, 2020

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Introduction to UNIX and the KI/BioMicro computational resources

Fri May 8, 2020

1:00pm-3:30pm

Duanduan Ma

Zoom

Zoom link

Introduction to R session 1

Wed May 13, 2020

1:00pm-3:30pm

Duanduan Ma

Zoom

Zoom link

Introduction to R session 2

Fri May 27, 2020

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Introduction of Python to biologists session 2

Fri June 5, 2020

2:00pm-4:00pm

Duanduan Ma

Zoom

Zoom link

Introduction of Python to biologists session 1

Mon June 8, 2020

2:00pm-4:00pm

Duanduan Ma

Zoom

Zoom link

Introduction of Python to biologists session 2

Mon June 15, 2020

2:00pm-4:00pm

Duanduan Ma

Zoom

Zoom link

Introduction to Biopython

Mon July 20, 2020

2:00pm-4:00pm

Duanduan Ma

Zoom

Zoom link

Introduction to UNIX and the KI/BioMicro computational resources

Mon September 14, 2020

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Introduction of machine learning and its applications in biology session I

Mon September 21, 2020

2:00pm-4:30pm

Duanduan Ma and Huiming Ding

Zoom

Zoom link

Introduction of machine learning and its applications in biology session II

Mon October 19, 2020

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Introduction to UNIX and the KI/BioMicro computational resources

Mon October 26, 2020

2:00pm-4:30pm

Jingzhi Zhu

Zoom

Zoom link

How to install software packages yourself on computing clusters

Mon November 9, 2020

2:00pm-4:30pm

Dikshant Pradhan

Zoom

Zoom link

Public Data Repositories

Wed December 9, 2020

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Introduction to R session 1

Wed December 16, 2020

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Introduction to R session 2

Tuesday February 16, 2021

2pm-4:30pm

Duanduan Ma

zoom

zoom link

Introduction to UNIX and the KI/BioMicro computational resources session I

Monday February 22, 2021

2pm-4:30pm

Jingzhi Zhu, Duanduan Ma

zoom

zoom link

Introduction to UNIX and the KI/BioMicro computational resources session II

Monday March 15, 2021

2pm-4:30pm

Duanduan Ma

zoom

zoom link

Introduction of Python to biologists session I

Monday March 22, 2021

2pm-4:30pm

Duanduan Ma

zoom

zoom link

Introduction of Python to biologists session II

Monday March 29, 2021

2pm-4:30pm

Duanduan Ma

zoom

zoom link

Introduction to Biopython

Monday April 12, 2021

2pm-3pm

Vincent Butty

zoom

zoom link

A Traveler's companion to RNA-Seq interpretation session I

Monday April 26, 2021

2pm-3pm

Vincent Butty

zoom

zoom link

A Traveler's companion to RNA-Seq interpretation session II

Monday May 3, 2021

2pm-3pm

Vincent Butty

zoom

zoom link

Single Cell RNA-seq

Monday May 10, 2021

2pm-4:30pm

Duanduan Ma

zoom

zoom link

Introduction to UNIX and the KI/BioMicro computational resources session I

Monday May 17, 2021

2pm-4:30pm

Jingzhi Zhu, Duanduan Ma

zoom

zoom link

Introduction to UNIX and the KI/BioMicro computational resources session II

Monday June 7, 2021

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Introduction to R session 1

Monday June 14, 2021

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Introduction to R session 2

Monday September 13, 2021

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Introduction to UNIX and the KI/BioMicro computational resources

Monday September 20, 2021

2:00pm-4:30pm

Jingzhi Zhu

Zoom

Zoom link

Effective utilization of IGB computational resources - SLURM & CONDA

Monday October 11, 2021

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Introduction to Python session I

Monday October 18, 2021

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Introduction to Python session II

Monday October 25, 2021

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Introduction to Biopython

Monday November 1, 2021

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Data processing and visualization using Python: Introduction to Pandas

Monday November 8, 2021

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Data processing and visualization using Python: Introduction to Matplotlib

Monday November 15, 2021

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Data processing and visualization using Python: Introduction to Seaborn

Monday December 13, 2021

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Introduction to Linux and the IGB computational resources

Tuesday February 8, 2022

2:00pm-4:30pm

Duanduan Ma and Jingzhi Zhu

Zoom

Zoom link

Introduction to Linux and the KI/BioMicro computational resources

Thursday March 3rd, 2022

2:00pm-3:00pm

Dikshant Pradhan

Zoom

Zoom link

Public Data Repositories

Monday March 14th, 2022

1:00pm-3:30pm

Vincent Butty

Zoom

Zoom link

RNA-Seq Design and Analysis Session I

Tuesday March 15th, 2022

1:00pm-3:30pm

Vincent Butty

Zoom

Zoom link

RNA-Seq Design and Analysis Session II

Thursday March 17th, 2022

1:00pm-3:30pm

Vincent Butty

Zoom

Zoom link

RNA-Seq Design and Analysis Session III

Monday March 28, 2022

1:00pm-3:30pm

Duanduan Ma and Jingzhi Zhu

Zoom

Zoom link

Introduction to Linux and the KI/BioMicro computational resources

Monday April 11, 2022

1:00pm-3:30pm

Duanduan Ma

Zoom

Zoom link

Introduction to R session 1

Wednesday April 13, 2022

1:00pm-3:30pm

Duanduan Ma

Zoom

Zoom link

Introduction to R session 2

Monday Apil 25th, 2022

1:00pm-3:30pm

Charlie Whittaker Dikshant Pradhan

Zoom

Zoom link

RNAseq HandsOn session 1

Wednesday Apil 27th, 2022

1:00pm-3:30pm

Charlie Whittaker Dikshant Pradhan

Zoom

Zoom link

RNAseq HandsOn session 2

Friday Apil 27th, 2022

1:00pm-3:30pm

Charlie Whittaker Dikshant Pradhan

Zoom

Zoom link

RNAseq HandsOn session 3

Monday September 19th, 2022

2:00pm-4:30pm

Duanduan Ma Jingzhi Zhu

Zoom

Zoom link

Introduction to Linux and Cluster Computing

Monday October 3rd, 2022

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Introduction of Python to biologists session I

Tuesday October 4th, 2022

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Introduction of Python to biologists session II

Friday October 7th, 2022

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Introduction to Biopython

Monday October 31st, 2022

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Data processing and visualization using Python: Introduction to Matplotlib

Wednesday November 2nd, 2022

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Data processing and visualization using Python: Introduction to Pandas

Friday November 4th, 2022

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Data processing and visualization using Python: Introduction to Seaborn

Monday November 14th, 2022

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Introduction of machine learning and its applications in biology. session I

Wednesday November 16th, 2022

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Introduction of machine learning and its applications in biology. session II

Monday December 5th, 2022

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Introduction to Linux and Cluster Computing

Monday February 6th, 2023

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Introduction to Linux and Cluster Computing

Tuesday February 21, 2023

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Introduction to R session 1

Wednesday February 22, 2023

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Introduction to R session 2

Mon March 13, 2023

2:00pm-3:30pm

Stuart Levine

Zoom

Zoom link

Advanced Excel/Google Sheets for Biologists & Administrators

Monday April 3rd, 2023

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Introduction of Python to biologists session I

Wednesday April 5th, 2023

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Introduction of Python to biologists session II

Monday April 10th, 2023

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Version control with Git session I

Wednesday April 12th, 2023

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Version control with Git session II

Monday April 24th, 2023

1:00pm-3:30pm

Vincent Butty

Zoom

Zoom link

Bulk RNA-Seq Design and Analysis Session I

Wednesday April 26th, 2023

1:00pm-3:30pm

Vincent Butty

Zoom

Zoom link

Bulk RNA-Seq Design and Analysis Session II

Thursday April 27th, 2023

1:00pm-3:30pm

Vincent Butty

Zoom

Zoom link

Single cell RNA-Seq Design and Analysis Session I

Friday April 28th, 2023

1:00pm-3:30pm

Vincent Butty

Zoom

Zoom link

Single cell RNA-Seq Design and Analysis Session II

Monday May 1st, 2023

2:00pm-4:30pm

Duanduan Ma

Zoom

Zoom link

Introduction to Linux and Cluster Computing

Monday May 15th, 2023

1:00pm-3:00pm

Charlie Whittaker

Zoom

Zoom link

RNAseq HandsOn session 1

Wednesday May 17th, 2023

1:00pm-3:00pm

Charlie Whittaker

Zoom

Zoom link

RNAseq HandsOn session 2

Thursday May 18th, 2023

1:00pm-3:00pm

Charlie Whittaker

Zoom

Zoom link

RNAseq HandsOn session 3

nday September 18th, 2023

2:00pm-4:30pm

Duanduan Ma

Building 56

56-602

Introduction to Linux and Cluster Computing

Tuesday September 26, 2023

2:00pm-4:30pm

Duanduan Ma

Building 56

56-602

Introduction of Python to biologists session I

Wednesday September 27, 2023

2:00pm-4:30pm

Duanduan Ma

Building 76

76-659

Introduction of Python to biologists session II

Thursday September 28, 2023

2:00pm-4:30pm

Duanduan Ma

Building 76

76-559

Introduction to Biopython

Monday October 16, 2023

2:00pm-4:30pm

Allen Soberanes & Duanduan Ma

Building 76

76-259

Introduction to Linux and Cluster Computing

Monday October 23th, 2023

2:00pm-4:30pm

Duanduan Ma

Building 76

76-259

Data processing and visualization using Python: Introduction to Pandas

Tuesday October 24th, 2023

2:00pm-4:30pm

Duanduan Ma

Building 76

76-659

Data processing and visualization using Python: Introduction to Matplotlib

Wednesday October 25th, 2023

2:00pm-4:30pm

Duanduan Ma

Building 76

76-359

Data processing and visualization using Python: Introduction to Seaborn

Monday November 13th, 2023

2:00pm-4:30pm

Duanduan Ma

Building 76

76-259

Introduction of machine learning and its applications in biology. session I

Tuesday November 14th, 2023

2:00pm-4:30pm

Duanduan Ma

Building 76

76-659

Introduction of machine learning and its applications in biology. session II

Monday November 27th, 2023

2:00pm-4:30pm

Allen Soberanes & Duanduan Ma

Building 76

76-259

Introduction to Unix and cluster computing

Monday December 12th, 2023

2:00pm-4:30pm

Charlie Demurjian

TBD

TBD

Data Deposition in Public Repositorie

Monday February 5, 2024

2:00pm-4:30pm

Allen Soberanes

Building 68

68-352

Introduction to Linux and Cluster Computing

Tuesday February 20, 2024

2:00pm-4:30pm

Duanduan Ma

Building 68

68-156

Introduction to R

Monday March 4, 2024

1:00pm-3:00pm

Vincent Butty

Building 68

68-181

Single-Cell RNA-Seq Session 1

Tuesday March 5, 2024

1:00pm-3:00pm

Vincent Butty

Building 68

68-180

Single-Cell RNA-Seq Session 2

Wednesday March 6, 2024

1:00pm-3:00pm

Vincent Butty

Building 68

68-181

Bulk RNA-Seq Session 1

Thursday March 7, 2024

1:00pm-3:00pm

Vincent Butty

Building 68

68-180

Bulk RNA-Seq Session 2

Monday March 18, 2024

2:00pm-4:30pm

Allen Soberanes

Building 68

68-474

Introduction to Linux and Cluster Computing

Monday April 1, 2024

2:00pm-4:30pm

Duanduan Ma

Building 68

68-156

Introduction to Python

Monday April 8, 2024

2:00pm-4:30pm

Duanduan Ma

Building 68

68-374

Biopython

Monday April 15, 2024

2:00pm-4:30pm

Duanduan Ma

Building 68

68-156

Machine Learning with Python

Monday April 22, 2024

2:00pm-4:30pm

Duanduan Ma

TBD

TBD

Data Processing with Python

Monday April 29, 2024

2:00pm-4:30pm

Allen Soberanes

Building 68

68-156

Introduction to Linux and Cluster Computing

Tuesday May 21, 2024

TBD

Charlie Whitaker

TBD

TBD

Shared workflows and containerized computing for Bulk RNA-Seq Analysis Session 1

Wednesday May 22, 2024

TBD

Charlie Whitaker

TBD

TBD

Shared workflows and containerized computing for Bulk RNA-Seq Analysis Session 2

Thursday May 23, 2024

TBD

Charlie Whitaker

TBD

TBD

Shared workflows and containerized computing for Bulk RNA-Seq Analysis Session 3

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A Traveler's companion to RNA-Seq interpretation session 1

A Traveler's companion to RNA-Seq interpretation session 2

RNA-Seq Experimental design + QC ; Slides

RNA-Seq analysis ; Slides

A Traveler's companion to RNA-Seq interpretation session 1 - Slides

A Traveler's companion to RNA-Seq interpretation session 2 - Slides

A Traveler's companion to RNA-Seq interpretation session 1 - Slides

A Traveler's companion to RNA-Seq interpretation session 2 - Slides

Single Cell RNA-Seq Slides:

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